RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g32960.1 View Network Show in Genome Browser |
| Other Names | Os04g0402200 |
| Description | TUDOR protein with multiple SNc domains, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 19920789-19929902 Nucleotide Length: 3171 |
| Protein-coding | LOC_Os04g32960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0005635 | nuclear envelope | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g51380 LOC_Os02g02410 LOC_Os03g52090 LOC_Os02g49986 |
| Downstream Genes | LOC_Os08g01840 LOC_Os06g14670 LOC_Os06g37180 LOC_Os10g25770 LOC_Os05g05860 LOC_Os07g14110 LOC_Os09g23620 LOC_Os08g33150 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g32960.1 |
| Rice Genome Annotation | LOC_Os04g32960.1 |
| Ricechip | LOC_Os04g32960.1 |
| KEGG | osa:9269825 dosa:Os04t0402200-00 |
| Entrez-Gene | 9269825 |