RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g33210.1 View Network Show in Genome Browser |
| Other Names | Os04g0405000 |
| Description | ERD1 protein, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 20094182-20099729 Nucleotide Length: 1761 |
| Protein-coding | LOC_Os04g33210 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g39630 LOC_Os01g53890 LOC_Os03g04960 LOC_Os01g66360 LOC_Os03g04140 LOC_Os02g10830 LOC_Os01g52260 LOC_Os03g07850 |
| Downstream Genes | LOC_Os08g33540 LOC_Os04g33220 LOC_Os06g05820 LOC_Os07g42632 LOC_Os06g43280 LOC_Os11g13420 LOC_Os05g25400 LOC_Os09g38759 LOC_Os06g06100 LOC_Os09g38420 LOC_Os10g32570 More.. |
| Reference | |
|---|---|
| PubMed | 20141629 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g33210.1 |
| Rice Genome Annotation | LOC_Os04g33210.1 |
| Ricechip | LOC_Os04g33210.1 |
| KEGG | osa:4335747 dosa:Os04t0405000-01 |
| Entrez-Gene | 4335747 |