RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g33640.1 View Network Show in Genome Browser |
| Other Names | Os04g0412300 |
| Description | glycosyl hydrolases family 17, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 20372913-20377959 Nucleotide Length: 1182 |
| Protein-coding | LOC_Os04g33640 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g55040 LOC_Os03g58204 LOC_Os01g47070 LOC_Os03g03610 LOC_Os01g58730 LOC_Os03g09820 |
| Downstream Genes | LOC_Os07g08330 LOC_Os08g37660 LOC_Os05g46330 LOC_Os06g08380 LOC_Os05g41610 LOC_Os09g36440 LOC_Os06g51270 LOC_Os10g22570 LOC_Os05g47480 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5515 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g33640.1 |
| Rice Genome Annotation | LOC_Os04g33640.1 |
| Ricechip | LOC_Os04g33640.1 |
| KEGG | osa:4335780 dosa:Os04t0412300-01 |
| Entrez-Gene | 4335780 |