RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g33780.1 View Network Show in Genome Browser |
| Other Names | Os04g0414100 |
| Description | OTU-like cysteine protease family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 20457921-20463115 Nucleotide Length: 1653 |
| Protein-coding | LOC_Os04g33780 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003682 | chromatin binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g06890 LOC_Os02g05450 |
| Downstream Genes | LOC_Os04g57480 LOC_Os08g42540 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR812s osa-miR5799 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g33780.1 |
| Rice Genome Annotation | LOC_Os04g33780.1 |
| Ricechip | LOC_Os04g33780.1 |
| KEGG | osa:4335795 dosa:Os04t0414100-01 |
| Entrez-Gene | 4335795 |