RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g33950.1 View Network Show in Genome Browser |
| Other Names | Os04g0416100 |
| Description | E2F family transcription factor protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 20549573-20555304 Nucleotide Length: 960 |
| Protein-coding | LOC_Os04g33950 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g05760 LOC_Os02g56130 LOC_Os02g03060 LOC_Os04g10650 LOC_Os01g63710 LOC_Os03g02680 LOC_Os03g52750 LOC_Os03g01850 |
| Downstream Genes | LOC_Os10g30420 LOC_Os11g29390 LOC_Os05g32600 LOC_Os06g08790 LOC_Os12g26060 LOC_Os12g03130 LOC_Os11g03430 LOC_Os11g28350 LOC_Os12g39210 LOC_Os12g31810 LOC_Os06g07480 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1861h osa-miR1861j |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g33950.1 |
| Rice Genome Annotation | LOC_Os04g33950.1 |
| Ricechip | LOC_Os04g33950.1 |
| KEGG | osa:4335808 dosa:Os04t0416100-01 |
| Entrez-Gene | 4335808 |