RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g33990.1 View Network Show in Genome Browser |
| Other Names | Os04g0416700 |
| Description | harpin-induced protein 1 domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 20579349-20580533 Nucleotide Length: 663 |
| Protein-coding | LOC_Os04g33990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g33550 LOC_Os03g55070 LOC_Os03g12250 LOC_Os01g70180 LOC_Os03g45920 LOC_Os01g47780 LOC_Os01g02139 LOC_Os01g67240 LOC_Os01g59150 LOC_Os03g64320 LOC_Os01g16030 More.. |
| Downstream Genes | LOC_Os05g32110 LOC_Os05g03174 LOC_Os05g48270 LOC_Os11g26190 LOC_Os09g07350 LOC_Os04g42620 LOC_Os07g06680 LOC_Os05g04820 LOC_Os07g41590 LOC_Os05g39670 LOC_Os06g30950 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g33990.1 |
| Rice Genome Annotation | LOC_Os04g33990.1 |
| Ricechip | LOC_Os04g33990.1 |
| KEGG | osa:4335811 dosa:Os04t0416700-01 |
| Entrez-Gene | 4335811 |