RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g34080.1 View Network Show in Genome Browser |
| Other Names | Os04g0417800 |
| Description | WD-40 repeat family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 20640334-20645392 Nucleotide Length: 2043 |
| Protein-coding | LOC_Os04g34080 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0004871 | signal transducer activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18840 LOC_Os03g54770 LOC_Os03g42710 LOC_Os03g26870 LOC_Os03g52794 LOC_Os01g42260 LOC_Os01g15020 |
| Downstream Genes | LOC_Os08g18150 LOC_Os08g38570 LOC_Os04g52400 LOC_Os07g12320 LOC_Os11g07480 LOC_Os09g12710 LOC_Os08g18880 LOC_Os11g03990 LOC_Os12g07450 LOC_Os09g12550 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g34080.1 |
| Rice Genome Annotation | LOC_Os04g34080.1 |
| Ricechip | LOC_Os04g34080.1 |
| KEGG | osa:4335815 dosa:Os04t0417800-01 |
| Entrez-Gene | 4335815 |