RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g34670.1 View Network Show in Genome Browser |
| Other Names | Os04g0424200 |
| Description | tRNA-splicing endonuclease positive effector-related, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 20967161-20973125 Nucleotide Length: 2289 |
| Protein-coding | LOC_Os04g34670 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009875 | pollen-pistil interaction | Biological Process | IEA | |
| GO:0009856 | pollination | Biological Process | IEA | |
| GO:0009605 | response to external stimulus | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g32526 LOC_Os03g13760 LOC_Os02g01250 LOC_Os02g53230 LOC_Os01g22990 LOC_Os03g16110 LOC_Os03g22570 LOC_Os02g39890 LOC_Os03g10780 LOC_Os02g06640 LOC_Os03g06190 More.. |
| Downstream Genes | LOC_Os07g30980 LOC_Os08g03390 LOC_Os07g31340 LOC_Os09g02700 LOC_Os11g07500 LOC_Os05g05860 LOC_Os08g22354 LOC_Os07g36940 LOC_Os08g12820 LOC_Os06g46770 LOC_Os05g42424 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g34670.1 |
| Rice Genome Annotation | LOC_Os04g34670.1 |
| Ricechip | LOC_Os04g34670.1 |
| KEGG | osa:9267783 dosa:Os04t0424200-00 |
| Entrez-Gene | 9267783 |