RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g34720.1 View Network Show in Genome Browser |
| Other Names | Os04g0425100 |
| Description | PHD-finger domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 21020556-21022753 Nucleotide Length: 1314 |
| Protein-coding | LOC_Os04g34720 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g31230 LOC_Os04g08410 LOC_Os01g01390 LOC_Os01g54100 LOC_Os01g41640 LOC_Os03g05690 LOC_Os01g64560 LOC_Os02g04480 LOC_Os01g54240 LOC_Os02g06500 LOC_Os02g48122 More.. |
| Downstream Genes | LOC_Os09g07360 LOC_Os09g38268 LOC_Os04g48370 LOC_Os04g42320 LOC_Os06g06420 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g34720.1 |
| Rice Genome Annotation | LOC_Os04g34720.1 |
| Ricechip | LOC_Os04g34720.1 |
| KEGG | osa:4335850 dosa:Os04t0425100-01 |
| Entrez-Gene | 4335850 |