RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g34930.1 View Network Show in Genome Browser |
| Other Names | Os04g0428900 |
| Description | COP9 signalosome complex subunit 8, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 21214944-21215985 Nucleotide Length: 591 |
| Protein-coding | LOC_Os04g34930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g10120 LOC_Os03g02540 LOC_Os03g10850 LOC_Os03g12840 LOC_Os01g59110 LOC_Os01g59100 LOC_Os03g51610 LOC_Os02g13870 |
| Downstream Genes | LOC_Os08g02550 LOC_Os07g12110 LOC_Os04g56070 LOC_Os10g01480 LOC_Os08g39070 LOC_Os07g07250 LOC_Os05g04530 LOC_Os08g17680 LOC_Os07g32040 LOC_Os11g09280 LOC_Os06g39260 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g34930.1 |
| Rice Genome Annotation | LOC_Os04g34930.1 |
| Ricechip | LOC_Os04g34930.1 |
| KEGG | osa:4335854 dosa:Os04t0428900-01 |
| Entrez-Gene | 4335854 |