RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g35430.1 View Network Show in Genome Browser |
| Other Names | Os04g0433900 |
| Description | PHD-finger domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 21539450-21543604 Nucleotide Length: 4308 |
| Protein-coding | LOC_Os04g35430 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g58010 LOC_Os03g55530 LOC_Os03g49230 LOC_Os03g46200 LOC_Os03g07990 LOC_Os03g05710 LOC_Os02g56219 LOC_Os02g46700 LOC_Os01g42470 LOC_Os03g09860 LOC_Os04g14510 More.. |
| Downstream Genes | LOC_Os10g35680 LOC_Os09g31310 LOC_Os09g17850 LOC_Os08g01170 LOC_Os05g40260 LOC_Os05g32180 LOC_Os04g54330 LOC_Os10g28040 LOC_Os12g34330 LOC_Os12g24540 LOC_Os11g14010 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g35430.1 |
| Rice Genome Annotation | LOC_Os04g35430.1 |
| Ricechip | LOC_Os04g35430.1 |
| KEGG | dosa:Os04t0433900-00 |