RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g35480.1 View Network Show in Genome Browser |
| Other Names | Os04g0434300 |
| Description | CDK5RAP1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 21579250-21581392 Nucleotide Length: 1881 |
| Protein-coding | LOC_Os04g35480 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g56310 LOC_Os02g15870 LOC_Os02g13360 LOC_Os03g56390 LOC_Os03g10520 LOC_Os01g74190 LOC_Os01g45370 LOC_Os01g67860 LOC_Os01g73760 LOC_Os03g24440 LOC_Os03g59570 More.. |
| Downstream Genes | LOC_Os04g40840 LOC_Os12g17070 LOC_Os04g38330 LOC_Os08g42730 LOC_Os12g32230 LOC_Os05g43576 LOC_Os06g40640 LOC_Os05g33380 LOC_Os10g08022 LOC_Os07g11050 LOC_Os12g02950 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g35480.1 |
| Rice Genome Annotation | LOC_Os04g35480.1 |
| Ricechip | LOC_Os04g35480.1 |
| KEGG | osa:4335891 dosa:Os04t0434300-01 |
| Entrez-Gene | 4335891 |