RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g35520.1 View Network Show in Genome Browser |
| Other Names | Os04g0434800 |
| Description | OsAPx7 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 21609373-21611533 Nucleotide Length: 1080 |
| Protein-coding | LOC_Os04g35520 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g55740 LOC_Os04g28180 LOC_Os02g28810 |
| Downstream Genes | LOC_Os05g42350 LOC_Os05g34770 LOC_Os11g42160 LOC_Os04g52130 LOC_Os09g35790 LOC_Os08g43334 LOC_Os06g07090 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00053 rn00480 |
| Metacyc Pathways | PWY-5461 PWY-2261 |
| Reference | |
|---|---|
| PubMed | 17916638 22196946 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g35520.1 |
| Rice Genome Annotation | LOC_Os04g35520.1 |
| Ricechip | LOC_Os04g35520.1 |
| KEGG | osa:4335896 dosa:Os04t0434800-01 |
| Entrez-Gene | 4335896 |