RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g35890.1 View Network Show in Genome Browser |
| Other Names | Os04g0439600 |
| Description | TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 21858813-21863618 Nucleotide Length: 2469 |
| Protein-coding | LOC_Os04g35890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05630 LOC_Os02g15594 LOC_Os03g18150 LOC_Os02g55560 LOC_Os04g31270 LOC_Os02g08364 LOC_Os02g12600 LOC_Os03g07300 LOC_Os01g49330 LOC_Os02g38780 LOC_Os02g35910 More.. |
| Downstream Genes | LOC_Os07g32380 LOC_Os06g44210 LOC_Os06g48300 LOC_Os06g33549 LOC_Os04g37904 LOC_Os04g56450 LOC_Os04g52000 LOC_Os09g30100 LOC_Os10g39540 LOC_Os05g50970 LOC_Os09g38550 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g35890.1 |
| Rice Genome Annotation | LOC_Os04g35890.1 |
| Ricechip | LOC_Os04g35890.1 |
| KEGG | osa:4335925 dosa:Os04t0439600-01 |
| Entrez-Gene | 4335925 |