RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g35920.2 View Network Show in Genome Browser |
| Other Names | Os04g0440100 |
| Description | nonsense-mediated decay UPF3, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 21886998-21892987 Nucleotide Length: 1524 |
| Protein-coding | LOC_Os04g35920 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g42040 LOC_Os03g58640 LOC_Os03g16369 LOC_Os03g17010 LOC_Os03g36930 LOC_Os01g45190 LOC_Os03g27820 LOC_Os02g02424 LOC_Os02g14130 LOC_Os01g10840 LOC_Os03g52794 More.. |
| Downstream Genes | LOC_Os07g31340 LOC_Os07g09320 LOC_Os05g04850 LOC_Os04g44220 LOC_Os09g07820 LOC_Os06g35530 LOC_Os04g42490 LOC_Os05g11730 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR172d-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g35920.2 |
| Rice Genome Annotation | LOC_Os04g35920.2 |
| Ricechip | LOC_Os04g35920.2 |
| KEGG | osa:4335928 dosa:Os04t0440100-01 |
| Entrez-Gene | 4335928 |