RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g36800.1 View Network Show in Genome Browser |
| Other Names | Os04g0445700 |
| Description | 3-oxoacyl-synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 22216909-22221345 Nucleotide Length: 1389 |
| Protein-coding | LOC_Os04g36800 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g63930 LOC_Os03g22950 LOC_Os03g39860 LOC_Os03g18590 LOC_Os02g30060 LOC_Os04g30760 LOC_Os03g26620 LOC_Os03g26530 LOC_Os03g12030 LOC_Os01g34560 LOC_Os02g56860 More.. |
| Downstream Genes | LOC_Os09g36860 LOC_Os11g31900 LOC_Os08g43580 LOC_Os05g31290 LOC_Os12g34890 LOC_Os07g12150 LOC_Os12g13930 LOC_Os04g55060 LOC_Os07g07440 LOC_Os11g37900 LOC_Os10g09860 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1846a-3p osa-miR1846b-3p osa-miR3980a-3p osa-miR3980b-3p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00061 rn01100 rn01040 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g36800.1 |
| Rice Genome Annotation | LOC_Os04g36800.1 |
| Ricechip | LOC_Os04g36800.1 |
| KEGG | osa:4335962 dosa:Os04t0445700-01 |
| Entrez-Gene | 4335962 |