RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g36890.1 View Network Show in Genome Browser |
| Other Names | Os04g0446500 |
| Description | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 22258294-22262579 Nucleotide Length: 1578 |
| Protein-coding | LOC_Os04g36890 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g61560 LOC_Os01g67134 LOC_Os02g49270 LOC_Os03g49210 LOC_Os03g58810 LOC_Os03g22740 LOC_Os03g22730 LOC_Os02g37870 LOC_Os02g57590 LOC_Os03g40180 LOC_Os03g46490 More.. |
| Downstream Genes | LOC_Os07g29320 LOC_Os07g25440 LOC_Os11g06750 LOC_Os07g47420 LOC_Os12g07010 LOC_Os06g09570 LOC_Os05g48422 LOC_Os07g01920 LOC_Os09g37860 LOC_Os08g09350 LOC_Os12g38970 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g36890.1 |
| Rice Genome Annotation | LOC_Os04g36890.1 |
| Ricechip | LOC_Os04g36890.1 |
| KEGG | osa:4335968 dosa:Os04t0446500-02 |
| Entrez-Gene | 4335968 |