RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os04g37920.4 View Network Show in Genome Browser
Other Names	Os04g0452100
Description	FAD binding domain of DNA photolyase domain containing protein, expressed
Gene Attributes	Chromosome: Chr4 CDS Coordinates (5'-3'): 22549901-22555079 Nucleotide Length: 2103
Protein-coding	LOC_Os04g37920

Gene Ontology Classification
GO	Name	Type	Code
GO:0009653	anatomical structure morphogenesis	Biological Process	IEA
GO:0008150	biological_process	Biological Process	IEA
GO:0008219	cell death	Biological Process	IEA
GO:0016049	cell growth	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0019725	cellular homeostasis	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0040007	growth	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0006464	protein modification process	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009605	response to external stimulus	Biological Process	IEA
GO:0006950	response to stress	Biological Process	IEA
GO:0019748	secondary metabolic process	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0016301	kinase activity	Molecular Function	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0004872	receptor activity	Molecular Function	IEA
GO:0004871	signal transducer activity	Molecular Function	IEA
GO:0005737	cytoplasm	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os02g53140 LOC_Os02g05700 LOC_Os03g30830 LOC_Os01g55820 LOC_Os03g54910 LOC_Os03g43890 LOC_Os01g12880 LOC_Os03g16860 LOC_Os02g52860 LOC_Os01g44090 LOC_Os03g51080 More..
Downstream Genes	LOC_Os10g08580 LOC_Os06g47890 LOC_Os12g16650 LOC_Os07g40940 LOC_Os07g29220 LOC_Os05g43690 LOC_Os07g30300 LOC_Os10g27050 LOC_Os05g27320 LOC_Os05g44340 LOC_Os05g38530 More..

miRNA Regulations
miRNAs	osa-miR444a-3p.1 osa-miR444d.1 osa-miR1848

Reference
PubMed	22764280 16805731

Database Links
Gramene	LOC_Os04g37920.4
Rice Genome Annotation	LOC_Os04g37920.4
Ricechip	LOC_Os04g37920.4
KEGG	osa:4336008 dosa:Os04t0452100-01
Entrez-Gene	4336008