RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g37950.1 View Network Show in Genome Browser |
| Other Names | Os04g0452400 |
| Description | ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 22567318-22573600 Nucleotide Length: 1104 |
| Protein-coding | LOC_Os04g37950 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g61200 LOC_Os01g66520 LOC_Os01g65220 LOC_Os02g14780 LOC_Os03g05720 LOC_Os03g21530 LOC_Os04g02150 LOC_Os03g52470 LOC_Os03g22890 LOC_Os02g50370 LOC_Os02g10780 More.. |
| Downstream Genes | LOC_Os12g06810 LOC_Os11g19250 LOC_Os04g52200 LOC_Os10g25110 LOC_Os06g40120 LOC_Os05g05450 LOC_Os07g10350 LOC_Os11g07500 LOC_Os09g24250 LOC_Os09g32740 LOC_Os07g43470 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5831 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g37950.1 |
| Rice Genome Annotation | LOC_Os04g37950.1 |
| Ricechip | LOC_Os04g37950.1 |
| KEGG | osa:4336009 dosa:Os04t0452400-01 |
| Entrez-Gene | 4336009 |