RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g37960.1 View Network Show in Genome Browser |
| Other Names | Os04g0452500 |
| Description | synaptonemal complex protein 2, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 22583456-22592933 Nucleotide Length: 2664 |
| Protein-coding | LOC_Os04g37960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g55280 LOC_Os03g43020 LOC_Os02g26440 LOC_Os02g14860 LOC_Os01g72800 |
| Downstream Genes | LOC_Os07g48700 LOC_Os07g26974 LOC_Os08g30060 LOC_Os12g37590 LOC_Os12g30060 LOC_Os11g36050 |
| Reference | |
|---|---|
| PubMed | 20154151 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g37960.1 |
| Rice Genome Annotation | LOC_Os04g37960.1 |
| Ricechip | LOC_Os04g37960.1 |
| KEGG | osa:4336010 dosa:Os04t0452500-00 |
| Entrez-Gene | 4336010 |