RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g38450.1 View Network Show in Genome Browser |
| Other Names | Os04g0457500 |
| Description | gamma-glutamyltranspeptidase 1 precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 22855359-22861007 Nucleotide Length: 1725 |
| Protein-coding | LOC_Os04g38450 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g21460 LOC_Os03g53400 LOC_Os03g04240 LOC_Os03g04250 LOC_Os01g12800 LOC_Os03g58150 LOC_Os02g48840 LOC_Os03g58140 LOC_Os02g47940 LOC_Os02g55980 LOC_Os01g72280 More.. |
| Downstream Genes | LOC_Os07g08070 LOC_Os04g41960 LOC_Os06g12580 LOC_Os05g43560 LOC_Os05g31770 LOC_Os10g42250 LOC_Os05g33360 LOC_Os07g08060 LOC_Os12g12580 LOC_Os06g20340 LOC_Os12g12590 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00460 rn00480 rn01100 rn00430 rn00590 |
| Metacyc Pathways | PWY-4041 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g38450.1 |
| Rice Genome Annotation | LOC_Os04g38450.1 |
| Ricechip | LOC_Os04g38450.1 |
| KEGG | osa:4336033 dosa:Os04t0457500-01 |
| Entrez-Gene | 4336033 |