RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g38600.1 View Network Show in Genome Browser |
| Other Names | Os04g0459500 |
| Description | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 22937056-22939073 Nucleotide Length: 1230 |
| Protein-coding | LOC_Os04g38600 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g58610 LOC_Os02g07260 LOC_Os04g33830 LOC_Os01g31690 LOC_Os03g56670 LOC_Os03g22370 LOC_Os04g38410 LOC_Os03g09220 LOC_Os01g62420 LOC_Os03g39610 LOC_Os02g47020 More.. |
| Downstream Genes | LOC_Os05g41640 LOC_Os06g45710 LOC_Os10g30550 LOC_Os05g48630 LOC_Os11g07020 LOC_Os09g30340 LOC_Os07g37240 LOC_Os11g47970 LOC_Os08g01380 LOC_Os06g15400 LOC_Os11g13890 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g38600.1 |
| Rice Genome Annotation | LOC_Os04g38600.1 |
| Ricechip | LOC_Os04g38600.1 |
| KEGG | osa:4336044 dosa:Os04t0459500-02 |
| Entrez-Gene | 4336044 |