RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g38640.1 View Network Show in Genome Browser |
| Other Names | Os04g0459900 |
| Description | OsDegp5 - Putative Deg protease homologue, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 22954845-22960460 Nucleotide Length: 1338 |
| Protein-coding | LOC_Os04g38640 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g63500 LOC_Os03g39850 LOC_Os02g58790 LOC_Os03g46740 LOC_Os03g57200 |
| Downstream Genes | LOC_Os08g24390 LOC_Os08g16480 LOC_Os10g34020 LOC_Os09g20220 LOC_Os05g41810 LOC_Os07g05800 LOC_Os08g19610 LOC_Os05g24660 LOC_Os10g22070 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g38640.1 |
| Rice Genome Annotation | LOC_Os04g38640.1 |
| Ricechip | LOC_Os04g38640.1 |
| KEGG | osa:9268615 dosa:Os04t0459900-01 |
| Entrez-Gene | 9268615 |