RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g38680.1 View Network Show in Genome Browser |
| Other Names | Os04g0460300 |
| Description | transmembrane amino acid transporter protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 22977814-22980352 Nucleotide Length: 1368 |
| Protein-coding | LOC_Os04g38680 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g14080 LOC_Os01g66010 LOC_Os01g63770 LOC_Os02g09810 LOC_Os02g49510 LOC_Os03g08960 LOC_Os01g61044 LOC_Os01g48680 LOC_Os03g60260 |
| Downstream Genes | LOC_Os10g23090 LOC_Os12g30040 LOC_Os05g34980 LOC_Os04g39489 LOC_Os06g42720 LOC_Os06g43700 LOC_Os06g16420 LOC_Os09g26290 LOC_Os07g12770 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g38680.1 |
| Rice Genome Annotation | LOC_Os04g38680.1 |
| Ricechip | LOC_Os04g38680.1 |
| KEGG | osa:4336049 dosa:Os04t0460300-01 |
| Entrez-Gene | 4336049 |