RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g38750.1 View Network Show in Genome Browser |
| Other Names | Os04g0461100 |
| Description | plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23027339-23029083 Nucleotide Length: 552 |
| Protein-coding | LOC_Os04g38750 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g69950 LOC_Os03g10060 LOC_Os01g71190 LOC_Os01g33160 LOC_Os02g04460 LOC_Os01g59060 LOC_Os03g15870 LOC_Os03g60100 LOC_Os03g62630 LOC_Os03g03020 LOC_Os03g21900 More.. |
| Downstream Genes | LOC_Os07g06450 LOC_Os12g34890 LOC_Os06g46930 LOC_Os05g27100 LOC_Os06g43900 LOC_Os11g34940 LOC_Os11g32320 LOC_Os12g02380 LOC_Os11g02450 LOC_Os09g10760 LOC_Os05g01110 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g38750.1 |
| Rice Genome Annotation | LOC_Os04g38750.1 |
| Ricechip | LOC_Os04g38750.1 |
| KEGG | osa:4336056 dosa:Os04t0461100-01 |
| Entrez-Gene | 4336056 |