RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g38770.1 View Network Show in Genome Browser |
| Other Names | Os04g0461300 |
| Description | OsMADS61 - MADS-box family gene with MIKCc type-box, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23040160-23041485 Nucleotide Length: 300 |
| Protein-coding | LOC_Os04g38770 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g54160 LOC_Os01g55040 LOC_Os04g35700 LOC_Os03g03610 LOC_Os01g22710 LOC_Os02g35010 LOC_Os03g17700 LOC_Os02g48840 |
| Downstream Genes | LOC_Os07g01820 LOC_Os11g40100 LOC_Os12g31350 LOC_Os11g10100 LOC_Os09g12800 LOC_Os07g19560 LOC_Os06g08380 LOC_Os07g37510 LOC_Os04g53930 LOC_Os07g37530 LOC_Os06g27890 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g38770.1 |
| Rice Genome Annotation | LOC_Os04g38770.1 |
| Ricechip | LOC_Os04g38770.1 |
| KEGG | osa:4336057 dosa:Os04t0461300-01 |
| Entrez-Gene | 4336057 |