RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g38900.1 View Network Show in Genome Browser |
| Other Names | Os04g0462900 |
| Description | prohibitin, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23116692-23117963 Nucleotide Length: 891 |
| Protein-coding | LOC_Os04g38900 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g05730 LOC_Os03g03360 LOC_Os03g62490 LOC_Os01g47540 LOC_Os03g30790 LOC_Os01g01960 LOC_Os01g55040 LOC_Os03g53400 LOC_Os02g12380 LOC_Os03g01216 LOC_Os02g12350 More.. |
| Downstream Genes | LOC_Os07g15880 LOC_Os06g07978 LOC_Os06g07878 LOC_Os06g07140 LOC_Os10g30580 LOC_Os06g38470 LOC_Os08g06200 LOC_Os10g34150 LOC_Os10g34130 LOC_Os10g34040 LOC_Os08g23320 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g38900.1 |
| Rice Genome Annotation | LOC_Os04g38900.1 |
| Ricechip | LOC_Os04g38900.1 |
| KEGG | osa:4336070 dosa:Os04t0462900-02 |
| Entrez-Gene | 4336070 |