RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g38940.2 View Network Show in Genome Browser |
| Other Names | Os04g0463400 |
| Description | integral membrane protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23134255-23137290 Nucleotide Length: 396 |
| Protein-coding | LOC_Os04g38940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0019725 | cellular homeostasis | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g57460 LOC_Os03g18550 LOC_Os03g17310 |
| Downstream Genes | LOC_Os06g01440 LOC_Os04g59020 LOC_Os09g20090 LOC_Os06g37080 LOC_Os08g05720 LOC_Os09g32952 LOC_Os06g37150 LOC_Os12g05440 LOC_Os07g06080 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g38940.2 |
| Rice Genome Annotation | LOC_Os04g38940.2 |
| Ricechip | LOC_Os04g38940.2 |
| KEGG | osa:4336075 dosa:Os04t0463400-01 |
| Entrez-Gene | 4336075 |