RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g39030.1 View Network Show in Genome Browser |
| Other Names | Os04g0464400 |
| Description | peptide transporter PTR2, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23178662-23182857 Nucleotide Length: 1779 |
| Protein-coding | LOC_Os04g39030 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g56110 LOC_Os03g29350 LOC_Os02g45460 LOC_Os03g56140 LOC_Os03g45170 LOC_Os04g01590 LOC_Os03g51690 LOC_Os03g51710 LOC_Os01g19694 LOC_Os03g41390 |
| Downstream Genes | LOC_Os07g42280 LOC_Os12g39400 LOC_Os09g25580 LOC_Os07g03770 LOC_Os10g30090 LOC_Os09g21000 LOC_Os12g42850 LOC_Os05g03884 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1858a osa-miR1858b |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g39030.1 |
| Rice Genome Annotation | LOC_Os04g39030.1 |
| Ricechip | LOC_Os04g39030.1 |
| KEGG | osa:9271316 dosa:Os04t0464400-00 |
| Entrez-Gene | 9271316 |