RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g39160.1 View Network Show in Genome Browser |
| Other Names | Os04g0465700 |
| Description | RNA-dependent RNA polymerase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23284808-23290538 Nucleotide Length: 3411 |
| Protein-coding | LOC_Os04g39160 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007267 | cell-cell signaling | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g60110 LOC_Os03g55150 LOC_Os01g66300 LOC_Os01g60260 |
| Downstream Genes | LOC_Os12g32240 LOC_Os07g40580 LOC_Os07g12490 LOC_Os07g02210 LOC_Os05g40290 LOC_Os05g34670 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR818a osa-miR818b osa-miR818c osa-miR818d osa-miR818e osa-miR1436 osa-miR1850.2
|
| Pathways | |
|---|---|
| KEGG Pathways | rn01100 rn00230 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g39160.1 |
| Rice Genome Annotation | LOC_Os04g39160.1 |
| Ricechip | LOC_Os04g39160.1 |
| KEGG | osa:4336092 dosa:Os04t0465700-01 |
| Entrez-Gene | 4336092 |