RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g39190.1 View Network Show in Genome Browser |
| Other Names | Os04g0466100 |
| Description | cell division protease ftsH homolog 4, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23305691-23311347 Nucleotide Length: 1734 |
| Protein-coding | LOC_Os04g39190 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g16670 LOC_Os03g60750 LOC_Os03g62370 LOC_Os03g19990 LOC_Os02g44200 LOC_Os04g34130 LOC_Os04g39060 |
| Downstream Genes | LOC_Os07g42632 LOC_Os06g49140 LOC_Os05g49230 LOC_Os09g27270 LOC_Os07g09720 LOC_Os10g36860 LOC_Os07g44410 LOC_Os04g46730 LOC_Os06g41380 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g39190.1 |
| Rice Genome Annotation | LOC_Os04g39190.1 |
| Ricechip | LOC_Os04g39190.1 |
| KEGG | osa:4336096 dosa:Os04t0466100-01 |
| Entrez-Gene | 4336096 |