RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g39210.1 View Network Show in Genome Browser |
| Other Names | Os04g0466600 |
| Description | agmatine deiminase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23315116-23319022 Nucleotide Length: 1143 |
| Protein-coding | LOC_Os04g39210 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g33080 LOC_Os02g42330 LOC_Os02g42350 |
| Downstream Genes | LOC_Os07g30170 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1442 osa-miR812k osa-miR812l osa-miR812m |
| Pathways | |
|---|---|
| KEGG Pathways | rn00330 rn01100 |
| Metacyc Pathways | PWY-43 ARGDEG-III-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g39210.1 |
| Rice Genome Annotation | LOC_Os04g39210.1 |
| Ricechip | LOC_Os04g39210.1 |
| KEGG | osa:9272649 dosa:Os04t0466600-01 |
| Entrez-Gene | 9272649 |