RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g39260.3 View Network Show in Genome Browser |
| Other Names | Os04g0467400 |
| Description | CAF1 family ribonuclease containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23356995-23361819 Nucleotide Length: 2184 |
| Protein-coding | LOC_Os04g39260 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g55300 LOC_Os01g56190 LOC_Os02g13130 |
| Downstream Genes | LOC_Os04g58810 LOC_Os08g01930 LOC_Os09g39462 LOC_Os06g14190 LOC_Os09g24990 LOC_Os08g34170 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2864.1 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g39260.3 |
| Rice Genome Annotation | LOC_Os04g39260.3 |
| Ricechip | LOC_Os04g39260.3 |
| KEGG | osa:9268289 dosa:Os04t0467400-01 |
| Entrez-Gene | 9268289 |