RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g39270.1 View Network Show in Genome Browser |
| Other Names | Os04g0467700 |
| Description | indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23362168-23365712 Nucleotide Length: 1260 |
| Protein-coding | LOC_Os04g39270 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g03450 LOC_Os03g61120 LOC_Os03g15780 LOC_Os04g38950 LOC_Os03g50880 LOC_Os02g03850 LOC_Os03g58260 LOC_Os03g58290 LOC_Os02g16630 LOC_Os03g58320 LOC_Os03g58300 More.. |
| Downstream Genes | LOC_Os07g08430 LOC_Os08g04180 LOC_Os09g32810 LOC_Os05g33260 LOC_Os06g48620 LOC_Os06g42560 LOC_Os04g56620 LOC_Os11g01890 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 |
| Metacyc Pathways | TRPSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g39270.1 |
| Rice Genome Annotation | LOC_Os04g39270.1 |
| Ricechip | LOC_Os04g39270.1 |
| KEGG | osa:4336102 dosa:Os04t0467700-01 |
| Entrez-Gene | 4336102 |