RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g39280.1 View Network Show in Genome Browser |
| Other Names | Os04g0467901,Os04g0467800 |
| Description | ATPOT1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23367176-23372741 Nucleotide Length: 1443 |
| Protein-coding | LOC_Os04g39280 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g64720 LOC_Os02g37920 LOC_Os02g29464 LOC_Os01g19490 LOC_Os02g34570 LOC_Os02g08440 LOC_Os02g15810 LOC_Os01g70790 |
| Downstream Genes | LOC_Os12g19040 LOC_Os10g06610 LOC_Os09g25760 LOC_Os06g02340 LOC_Os08g37370 LOC_Os04g54840 LOC_Os07g06970 LOC_Os06g44010 LOC_Os04g48850 LOC_Os11g36390 LOC_Os05g51130 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2927 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g39280.1 |
| Rice Genome Annotation | LOC_Os04g39280.1 |
| Ricechip | LOC_Os04g39280.1 |
| KEGG | osa:4336103 dosa:Os04t0467901-00dosa:Os04t0467800-01 |