RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os04g39280.2 View Network Show in Genome Browser
Other Names	Os04g0467901,Os04g0467800
Description	ATPOT1, putative, expressed
Gene Attributes	Chromosome: Chr4 CDS Coordinates (5'-3'): 23367246-23372741 Nucleotide Length: 807
Protein-coding	LOC_Os04g39280

Gene Ontology Classification
GO	Name	Type	Code
GO:0016043	cellular component organization	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0006259	DNA metabolic process	Biological Process	IEA
GO:0006259	DNA metabolic process	Biological Process	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005515	protein binding	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g64720 LOC_Os02g37920 LOC_Os02g29464 LOC_Os01g19490 LOC_Os02g34570 LOC_Os02g08440 LOC_Os02g15810 LOC_Os01g70790
Downstream Genes	LOC_Os12g19040 LOC_Os10g06610 LOC_Os09g25760 LOC_Os06g02340 LOC_Os08g37370 LOC_Os04g54840 LOC_Os07g06970 LOC_Os06g44010 LOC_Os04g48850 LOC_Os11g36390 LOC_Os05g51130 More..

miRNA Regulations
miRNAs	osa-miR2927 osa-miR5512a osa-miR5512b

Database Links
Gramene	LOC_Os04g39280.2
Rice Genome Annotation	LOC_Os04g39280.2
Ricechip	LOC_Os04g39280.2
KEGG	osa:4336103 dosa:Os04t0467901-00 dosa:Os04t0467800-01