RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os04g39430.1 View Network Show in Genome Browser
Other Names	Os04g0469800
Description	cytochrome P450, putative, expressed
Gene Attributes	Chromosome: Chr4 CDS Coordinates (5'-3'): 23467128-23471594 Nucleotide Length: 1443
Protein-coding	LOC_Os04g39430

Gene Ontology Classification
GO	Name	Type	Code
GO:0009653	anatomical structure morphogenesis	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0016049	cell growth	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0006629	lipid metabolic	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0009719	response to endogenous stimulus	Biological Process	IEA
GO:0007165	signal transduction	Biological Process	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0005783	endoplasmic reticulum	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g63540 LOC_Os02g38290 LOC_Os03g07250 LOC_Os01g72260 LOC_Os03g04640 LOC_Os01g41810 LOC_Os01g43760 LOC_Os01g72270 LOC_Os03g37290 LOC_Os01g08810 LOC_Os01g63930 More..
Downstream Genes	LOC_Os06g39880 LOC_Os06g37364 LOC_Os04g47250 LOC_Os04g48460 LOC_Os08g16260 LOC_Os09g36370 LOC_Os05g37250 LOC_Os05g08850 LOC_Os11g32240 LOC_Os07g45000 LOC_Os07g23710 More..

miRNA Regulations
miRNAs	osa-miR2275a osa-miR2275b

Pathways
KEGG Pathways	rn00940 rn01110 rn01100 rn00130 rn00360 rn00941 rn00945 rn00380 rn00905
Metacyc Pathways	PWY-581 PWY-2181 PWY-2582 PWY66-201

Reference
PubMed	15705958

Database Links
Gramene	LOC_Os04g39430.1
Rice Genome Annotation	LOC_Os04g39430.1
Ricechip	LOC_Os04g39430.1
KEGG	osa:4336116 dosa:Os04t0469800-01
Entrez-Gene	4336116