RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g39610.1 View Network Show in Genome Browser |
| Other Names | Os04g0472300 |
| Description | glycerophosphoryl diester phosphodiesterase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23606626-23611506 Nucleotide Length: 2223 |
| Protein-coding | LOC_Os04g39610 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g31030 LOC_Os02g43620 LOC_Os04g01540 |
| Downstream Genes | LOC_Os09g38540 LOC_Os12g34890 |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY0-381 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g39610.1 |
| Rice Genome Annotation | LOC_Os04g39610.1 |
| Ricechip | LOC_Os04g39610.1 |
| KEGG | osa:4336129 dosa:Os04t0472300-01 |
| Entrez-Gene | 4336129 |