RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g39680.1 View Network Show in Genome Browser |
| Other Names | Os04g0472900 |
| Description | anthranilate phosphoribosyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23640853-23643655 Nucleotide Length: 2568 |
| Protein-coding | LOC_Os04g39680 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g18010 LOC_Os02g10630 |
| Downstream Genes | LOC_Os07g49330 LOC_Os06g19400 LOC_Os06g40570 LOC_Os12g37560 LOC_Os08g38440 LOC_Os05g03610 LOC_Os04g40070 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00710 rn01100 rn01110 rn01120 rn00400 |
| Metacyc Pathways | P124-PWY ANAEROFRUCAT-PWY GLUCONEO-PWY PWY-1042 CALVIN-PWY PWY-3801 GLYCOLYSIS TRPSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g39680.1 |
| Rice Genome Annotation | LOC_Os04g39680.1 |
| Ricechip | LOC_Os04g39680.1 |
| KEGG | osa:4336135 dosa:Os04t0472900-01 |
| Entrez-Gene | 4336135 |