RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g39780.1 View Network Show in Genome Browser |
| Other Names | Os04g0473900,Os04g0473850 |
| Description | AMP-binding enzyme family protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23698662-23707348 Nucleotide Length: 7176 |
| Protein-coding | LOC_Os04g39780 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g58400 |
| Downstream Genes | LOC_Os08g31840 LOC_Os04g52460 LOC_Os07g08500 LOC_Os05g43610 LOC_Os04g43300 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g39780.1 |
| Rice Genome Annotation | LOC_Os04g39780.1 |
| Ricechip | LOC_Os04g39780.1 |
| KEGG | osa:9266980 dosa:Os04t0473900-00 |
| Entrez-Gene | 9266980 |