RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g40290.1 View Network Show in Genome Browser |
| Other Names | Os04g0479000 |
| Description | AAA-type ATPase family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 23955470-23959975 Nucleotide Length: 1458 |
| Protein-coding | LOC_Os04g40290 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g08490 LOC_Os04g32560 LOC_Os03g42010 LOC_Os01g53070 LOC_Os03g05730 LOC_Os02g53500 LOC_Os01g16650 LOC_Os01g36390 LOC_Os02g12570 LOC_Os01g56600 LOC_Os03g56810 More.. |
| Downstream Genes | LOC_Os12g07720 LOC_Os05g44340 LOC_Os06g36700 LOC_Os11g04954 LOC_Os12g04980 LOC_Os12g39210 LOC_Os05g46270 LOC_Os12g31810 LOC_Os07g32480 LOC_Os09g36300 LOC_Os06g14670 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g40290.1 |
| Rice Genome Annotation | LOC_Os04g40290.1 |
| Ricechip | LOC_Os04g40290.1 |
| KEGG | osa:4336167 dosa:Os04t0479000-01 |
| Entrez-Gene | 4336167 |