RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g40410.1 View Network Show in Genome Browser |
| Other Names | Os04g0480200 |
| Description | high affinity nitrate transporter, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24018289-24019456 Nucleotide Length: 633 |
| Protein-coding | LOC_Os04g40410 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g58730 LOC_Os01g59110 LOC_Os01g59100 LOC_Os03g15770 LOC_Os03g58580 LOC_Os02g08180 LOC_Os01g25386 LOC_Os01g38510 LOC_Os03g51430 LOC_Os01g59440 LOC_Os01g40860 More.. |
| Downstream Genes | LOC_Os09g27830 LOC_Os10g38930 LOC_Os08g17680 LOC_Os04g58090 LOC_Os06g18000 LOC_Os06g06180 LOC_Os06g39260 LOC_Os11g09010 LOC_Os09g19734 LOC_Os05g47770 LOC_Os09g29370 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g40410.1 |
| Rice Genome Annotation | LOC_Os04g40410.1 |
| Ricechip | LOC_Os04g40410.1 |
| KEGG | osa:4336175 dosa:Os04t0480200-01 |
| Entrez-Gene | 4336175 |