RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g40420.1 View Network Show in Genome Browser |
| Other Names | Os04g0480300 |
| Description | SWIRM domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24021401-24026205 Nucleotide Length: 1683 |
| Protein-coding | LOC_Os04g40420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g53960 LOC_Os01g51154 LOC_Os02g51880 LOC_Os03g10570 LOC_Os03g56970 LOC_Os02g49190 LOC_Os02g10060 LOC_Os02g11750 LOC_Os02g05310 LOC_Os04g25550 LOC_Os01g62040 More.. |
| Downstream Genes | LOC_Os08g04780 LOC_Os10g38850 LOC_Os04g47270 LOC_Os10g29514 LOC_Os07g46660 LOC_Os08g04280 LOC_Os04g54440 LOC_Os04g54430 LOC_Os09g12710 LOC_Os11g14010 LOC_Os10g41030 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g40420.1 |
| Rice Genome Annotation | LOC_Os04g40420.1 |
| Ricechip | LOC_Os04g40420.1 |
| KEGG | osa:4336176 dosa:Os04t0480300-01 |
| Entrez-Gene | 4336176 |