RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g40530.1 View Network Show in Genome Browser |
| Other Names | Os04g0481300 |
| Description | methyltransferase domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24073335-24074729 Nucleotide Length: 807 |
| Protein-coding | LOC_Os04g40530 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g31000 LOC_Os02g51490 LOC_Os02g51030 LOC_Os02g47310 LOC_Os01g57620 LOC_Os01g50030 LOC_Os01g40660 LOC_Os03g04340 |
| Downstream Genes | LOC_Os12g10200 LOC_Os11g35340 LOC_Os10g34740 LOC_Os08g31750 LOC_Os08g02600 LOC_Os07g08200 LOC_Os06g37610 LOC_Os06g06730 LOC_Os06g05900 LOC_Os07g44640 LOC_Os07g10600 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1442 osa-miR1439 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g40530.1 |
| Rice Genome Annotation | LOC_Os04g40530.1 |
| Ricechip | LOC_Os04g40530.1 |
| KEGG | osa:4336185 dosa:Os04t0481300-01 |
| Entrez-Gene | 4336185 |