RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g40540.3 View Network Show in Genome Browser |
| Other Names | Os04g0481400 |
| Description | protein-L-isoaspartate O-methyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24075211-24077600 Nucleotide Length: 489 |
| Protein-coding | LOC_Os04g40540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g51280 LOC_Os01g56620 LOC_Os01g66360 LOC_Os02g45660 LOC_Os01g43020 LOC_Os03g15950 LOC_Os01g46570 LOC_Os01g08540 LOC_Os03g14450 |
| Downstream Genes | LOC_Os07g10460 LOC_Os07g30240 LOC_Os09g37600 LOC_Os12g36950 LOC_Os05g49770 LOC_Os10g08550 LOC_Os05g49460 LOC_Os05g41880 LOC_Os09g20820 LOC_Os05g49520 LOC_Os04g58630 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g40540.3 |
| Rice Genome Annotation | LOC_Os04g40540.3 |
| Ricechip | LOC_Os04g40540.3 |
| KEGG | osa:4336186 dosa:Os04t0481400-01 |
| Entrez-Gene | 4336186 |