RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g40840.1 View Network Show in Genome Browser |
| Other Names | Os04g0484900 |
| Description | elongator complex protein 3, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24237082-24240761 Nucleotide Length: 1722 |
| Protein-coding | LOC_Os04g40840 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0040007 | growth | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g56310 LOC_Os03g56390 LOC_Os04g17064 LOC_Os04g35480 LOC_Os01g33030 LOC_Os04g38330 LOC_Os02g15870 LOC_Os03g19960 LOC_Os03g10520 LOC_Os01g74190 LOC_Os01g45370 More.. |
| Downstream Genes | LOC_Os08g38570 LOC_Os06g30320 LOC_Os07g37640 LOC_Os07g25440 LOC_Os05g43576 LOC_Os12g07300 LOC_Os08g42730 LOC_Os12g17070 LOC_Os07g40930 LOC_Os11g38030 LOC_Os06g43690 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g40840.1 |
| Rice Genome Annotation | LOC_Os04g40840.1 |
| Ricechip | LOC_Os04g40840.1 |
| KEGG | osa:4336205 dosa:Os04t0484900-01 |
| Entrez-Gene | 4336205 |