RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g40850.1 View Network Show in Genome Browser |
| Other Names | Os04g0485000 |
| Description | 26S proteasome non-ATPase regulatory subunit 6, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24240921-24243770 Nucleotide Length: 1170 |
| Protein-coding | LOC_Os04g40850 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g63430 LOC_Os01g32800 LOC_Os03g11570 LOC_Os03g18690 LOC_Os03g08280 LOC_Os02g11050 LOC_Os02g10640 LOC_Os04g36700 LOC_Os01g16190 LOC_Os02g54340 LOC_Os01g70140 More.. |
| Downstream Genes | LOC_Os07g49150 LOC_Os07g25420 LOC_Os08g43640 LOC_Os04g56646 LOC_Os09g37000 LOC_Os06g40560 LOC_Os08g41730 LOC_Os05g30800 LOC_Os06g07978 LOC_Os06g07878 LOC_Os06g09290 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR444d.3 |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g40850.1 |
| Rice Genome Annotation | LOC_Os04g40850.1 |
| Ricechip | LOC_Os04g40850.1 |
| KEGG | osa:4336206 dosa:Os04t0485000-01 |
| Entrez-Gene | 4336206 |