RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g40870.1 View Network Show in Genome Browser |
| Other Names | Os04g0485200 |
| Description | alveolar soft part sarcoma chromosome region, candidate 1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24253308-24257461 Nucleotide Length: 897 |
| Protein-coding | LOC_Os04g40870 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0040007 | growth | Biological Process | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g05730 LOC_Os04g39040 LOC_Os02g08480 LOC_Os01g68950 LOC_Os01g68940 LOC_Os03g57100 LOC_Os01g64280 LOC_Os02g08370 |
| Downstream Genes | LOC_Os10g30580 LOC_Os04g57520 LOC_Os11g18880 LOC_Os10g37630 LOC_Os07g03160 LOC_Os05g24601 LOC_Os06g42810 LOC_Os04g48770 LOC_Os12g25640 LOC_Os11g39650 LOC_Os09g30411 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g40870.1 |
| Rice Genome Annotation | LOC_Os04g40870.1 |
| Ricechip | LOC_Os04g40870.1 |
| KEGG | osa:4336208 dosa:Os04t0485200-01 |
| Entrez-Gene | 4336208 |