RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g40874.1 View Network Show in Genome Browser |
| Other Names | Os04g0485300 |
| Description | glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24261369-24267801 Nucleotide Length: 834 |
| Protein-coding | LOC_Os04g40874 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g30300 LOC_Os01g70170 LOC_Os03g03720 |
| Downstream Genes | LOC_Os09g35970 LOC_Os07g41280 LOC_Os08g43370 LOC_Os11g29400 LOC_Os06g02144 LOC_Os08g05830 LOC_Os07g12160 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00030 rn00480 rn01100 rn01110 rn01120 |
| Metacyc Pathways | OXIDATIVEPENT-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g40874.1 |
| Rice Genome Annotation | LOC_Os04g40874.1 |
| Ricechip | LOC_Os04g40874.1 |
| KEGG | osa:4336209 dosa:Os04t0485300-01 |
| Entrez-Gene | 4336209 |