RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os04g40880.3 View Network Show in Genome Browser |
| Other Names | Os04g0485400 |
| Description | nucleotide-binding protein 1, putative, expressed |
| Gene Attributes | Chromosome: Chr4 CDS Coordinates (5'-3'): 24267885-24270169 Nucleotide Length: 1041 |
| Protein-coding | LOC_Os04g40880 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g16190 LOC_Os03g08280 LOC_Os03g58630 LOC_Os01g53250 LOC_Os01g60660 LOC_Os02g53060 LOC_Os01g70140 LOC_Os02g51730 LOC_Os04g23820 LOC_Os03g03650 LOC_Os02g10640 More.. |
| Downstream Genes | LOC_Os09g36710 LOC_Os08g43540 LOC_Os06g31210 LOC_Os10g26050 LOC_Os05g30800 LOC_Os07g36090 LOC_Os12g35580 LOC_Os06g36700 LOC_Os05g28510 LOC_Os07g08840 LOC_Os04g48710 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os04g40880.3 |
| Rice Genome Annotation | LOC_Os04g40880.3 |
| Ricechip | LOC_Os04g40880.3 |
| KEGG | osa:4336210 dosa:Os04t0485400-02 |
| Entrez-Gene | 4336210 |